WebRunning fMRIPrep directly interacting with the Docker Engine¶ If you need a finer control over the container execution, or you feel comfortable with the Docker Engine, avoiding … WebHosted on the Open Science Framework fmriprep-docker ----- ----- fmriprep-docker is a light weight python wrapper for the BIDS app, fmriprep, allowing fmriprep to be run from within a Docker environment.
fmriprep/fmriprep_docker.py at master · nipreps/fmriprep …
WebThe fMRIPrep on Docker wrapper. This is a lightweight Python wrapper to run fMRIPrep. Docker must be installed and running. This can be checked running. docker info. Please acknowledge this work using the citation boilerplate that fMRIPrep includes in the visual report generated for every subject processed. WebJul 6, 2024 · I’m using the latest version of fmriprep (not the fmriprep-docker wrapper), and I’ve run into a problem where I mounted the license file into the docker container, but when I reference it using the --fs-license-file argument, it returns the error: fmriprep: error: Path should point to a file (or symlink of file) This is the command I’m using, is there … highway map of north georgia
Running fMRIPrep via Docker containers
Webfmriprep-docker implements the unified command-line interface of BIDS Apps, and automatically translates directories into Docker mount points for you. We have published … WebThe fmriprep workflow takes as principal input the path of the dataset that is to be processed. The input dataset is required to be in valid BIDS format, and it must include … WebThis fmriprep-docker package is just a simple wrapper around the appropriate Docker command to run the complicated “containerized” Fmriprep command. We strongly recommend this method. To install fmriprep-docker, you can use pip (from your command line): pip install fmriprep-docker. small table for plants indoors